Construct autocorrelation Matrix in Matlab & Python

Auto-correlation, also called series correlation, is the correlation of a given sequence with itself as a function of time lag. Cross-correlation is a more generic term, which gives the correlation between two different sequences as a function of time lag.

Given two sequences and , the cross-correlation at times separated by lag i is given by ( denotes complex conjugate operation)

Auto-correlation is a special case of cross-correlation, where x=y. One can use a brute force method (using for loops implementing the above equation) to compute the auto-correlation sequence. However, other alternatives are also at your disposal.

Method 1: Auto-correlation using xcorr function

Matlab

For a N-dimensional given vector x, the Matlab command xcorr(x,x) or simply xcorr(x) gives the auto-correlation sequence. For the input sequence x=[1,2,3,4], the command xcorr(x) gives the following result.

>> x=[1 2 3 4]
>> acf=xcorr(x)
acf= 4   11   20   30   20   11  4

Python

In Python, autocorrelation of 1-D sequence can be obtained using numpy.correlate function. Set the parameter mode=’full’ which is useful for calculating the autocorrelation as a function of lag.

import numpy as np
x = np.asarray([1,2,3,4])
np.correlate(x, x,mode='full')
# output: array([ 4, 11, 20, 30, 20, 11,  4])

Method 2: Auto-correlation using Convolution

Auto-correlation sequence can be computed as the convolution between the given sequence and the reversed (flipped) version of the conjugate of the sequence.The conjugate operation is not needed if the input sequence is real.

Matlab

>> x=[1 2 3 4]
>> acf=conv(x,fliplr(conj(x)))
acf= 4   11   20   30   20   11  4

Python

import numpy as np
x = np.asarray([1,2,3,4])
np.convolve(x,np.conj(x)[::-1])
# output: array([ 4, 11, 20, 30, 20, 11,  4])

Method 3: Autocorrelation using Toeplitz matrix

Autocorrelation sequence can be found using Toeplitz matrices. An example for using Toeplitz matrix structure for computing convolution is given here. The same technique is extended here, where one signal is set as input sequence and the other is just the flipped version of its conjugate. The conjugate operation is not needed if the input sequence is real.

Matlab

>> x=[1 2 3 4]
>> acf=toeplitz([x zeros(1,length(x)-1)],[x(1) zeros(1,length(conj(x))-1)])*fliplr(x).'
acf= 4   11   20   30   20   11  4

Python

import numpy as np
from scipy.linalg import toeplitz
x = np.asarray([1,2,3,4])
toeplitz(np.pad(x, (0,len(x)-1),mode='constant'),np.pad([x[0]], (0,len(x)-1),mode='constant'))@x[::-1]
# output: array([ 4, 11, 20, 30, 20, 11, 4])

Method 4: Auto-correlation using FFT/IFFT

Auto-correlation sequence can be found using FFT/IFFT pairs. An example for using FFT/IFFT for computing convolution is given here. The same technique is extended here, where one signal is set as input sequence and the other is just the flipped version of its conjugate.The conjugate operation is not needed if the input sequence is real.

Matlab

>> x=[1 2 3 4]
>> L = 2*length(x)-1
>> acf=ifft(fft(x,L).*fft(fliplr(conj(x)),L))
acf= 4   11   20   30   20   11  4

Python

import numpy as np
from scipy.fftpack import fft,ifft

x = np.asarray([1,2,3,4])

L = 2*len(x) - 1
ifft(fft(x,L)*fft(np.conj(x)[::-1],L))
#output: array([ 4+0j, 11+0j, 20+0j, 30+0j, 20+0j, 11+0j, 4+0j])

Note that in all the above cases, due to the symmetry property of auto-correlation function, the center element represents .

Construction the Auto-correlation Matrix

Auto-correlation matrix is a special form of matrix constructed from auto-correlation sequence. It takes the following form.

The auto-correlation matrix is easily constructed, once the auto-correlation sequence is known. The auto-correlation matrix is a Hermitian matrix as well as a Toeplitz matrix. This property is exploited in the following code for constructing the Auto-Correlation matrix.

Matlab

>> x=[1+j 2+j 3-j] %x is complex
>> acf=conv(x,fliplr(conj(x)))% %using Method 2 to compute Auto-correlation sequence
>>Rxx=acf(3:end); % R_xx(0) is the center element
>>Rx=toeplitz(Rxx,[Rxx(1) conj(Rxx(2:end))])

Python

import numpy as np
x = np.asarray([1+1j,2+1j,3-1j]) #x is complex
acf = np.convolve(x,np.conj(x)[::-1]) # using Method 2 to compute Auto-correlation sequence
Rxx=acf[2:]; # R_xx(0) is the center element
Rx = toeplitz(Rxx,np.hstack((Rxx[0], np.conj(Rxx[1:]))))

Result:

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References:

[1] Reddi.S.S,”Eigen Vector properties of Toeplitz matrices and their application to spectral analysis of time series, Signal Processing, Vol 7,North-Holland, 1984,pp 46-56.↗
[2] Robert M. Gray,”Toeplitz and circulant matrices – an overview”,Department of Electrical Engineering,Stanford University,Stanford 94305,USA.↗
[3] Matlab documentation help on Toeplitz command.↗

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Methods to compute linear convolution

Mathematical details of convolution, its relationship to polynomial multiplication and the application of Toeplitz matrices in computing linear convolution are discussed in the previous article. A short survey of different techniques to compute discrete linear convolution (with Matlab code) is given here.

Definition

Given an LTI (Linear Time Invariant) system with impulse response \(h[n]\) and an input sequence \(x[n]\), the output of the system \(y[n]\) is obtained by convolving the input sequence and impulse response.

\[ y[k]=h[n] \ast x[n] = \sum_{i= -\infty}^{\infty} x[i] h[k-i] \]

where, the sequence \(x[n]\) is of length \(N\) and \(h[n]\) is of length \(M\).

This article is part of the following books
Digital Modulations using Matlab : Build Simulation Models from Scratch, ISBN: 978-1521493885
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Method 1 – Brute-Force Method:

The above equation can simply be implemented using nested for-loops, which consume the most computational time of all the methods given here. Typically, the computational complexity is \(O(n^2)\) time.

Python

def conv_brute_force(x,h):
	"""
	Brute force method to compute convolution
	Parameters:
	x, h : numpy vectors
	Returns:
		y : convolution of x and h
	"""
	N=len(x)
	M=len(h)
	y = np.zeros(N+M-1) #array filled with zeros
	
	for i in np.arange(0,N):
		for j in np.arange(0,M):
			y[i+j] = y[i+j] + x[i] * h[j]
return y

Matlab

for i = 0:n+m,
   yi = 0;
for i = 0 :n,
   for k = 0 to m,
      y[i+k] = y[i+k] + x[i] · h[k];

Method 2 – Using Toeplitz Matrix:

When the sequences \(h[n]\) and \(x[n]\) are represented as matrices, the linear convolution operation can be equivalently represented as

\[y=h \ast x=x \ast h=Toeplitz(h) X\]

Assume that the sequence \(h[n]\) is of length 4 given by \(h[n]=[h_0,h_1,h_2,h_3]\) and the sequence \(x[n]\) is of length 3 given by \(x[n]=[x_0,x_1,x_2]\). The convolution \(h[n] \ast x[n]\) is given by

\[y[k]=h[n] \ast x[n] = \displaystyle{\sum_{i=-\infty}^{\infty}x[i]h[k-i]}, \quad\quad k=0,1,\cdots,5\]

Equivalent representation of the above convolution can be written as

\[\begin{bmatrix}y[0]\\y[1]\\y[2]\\y[3]\\y[4]\\y[5]\end{bmatrix}=\begin{bmatrix}h[0] &0 & 0 \\h[1] &h[0] & 0 \\h[2] & h[1] & h[0] \\h[3] & h[2] & h[1] \\0 & h[3] & h[2] \\0 & 0 & h[3]\end{bmatrix}\begin{bmatrix}x[0]\\x[1]\\x[2] \end{bmatrix}\]

The matrix representing the incremental delays of \(h[n]\) used in the above equation is a special form of matrix called Toeplitz matrix. Toeplitz matrix have constant entries along their diagonals. Toeplitz matrices are used to model systems that posses shift invariant properties. The property of shift invariance is evident from the matrix structure itself. Since we are modelling a Linear Time Invariant system[1], Toeplitz matrices are our natural choice. On a side note, a special form of Toeplitz matrix called “circulant matrix” is used in applications involving circular convolution and Discrete Fourier Transform (DFT)[2].

For python code: refer the book – Digital modulations using Python

Matlab has inbuilt function to compute Toeplitz matrix from given vector. Toeplitz matrix of sequence \(h\) is given as

\[Toeplitz (h) = \begin{bmatrix}h[0] &0 & 0 \\h[1] &h[0] & 0 \\h[2] & h[1] & h[0] \\h[3] & h[2] & h[1] \\0 & h[3] & h[2] \\0 & 0 & h[3]\end{bmatrix}\]

In Matlab, it is constructed by calling Toeplitz function[3] with two arguments. The first argument is the first column of the above matrix -\( [h_0,h_1,h_2,h_3,0,0]\) and the second argument is the first row of the above matrix – \([h_0,0,0]\).

y=toeplitz([h0 h1 h2 h3 0 0],[h0 0 0])*x.';

In the generalized case, where \(x\) and \(h\) are of any arbitrary lengths (say \(N\) and \(M\)), the code can be modified as follows [here it is assumed that \( length (x) \geq length(h)\) ]

k=toeplitz([h zeros(1,length(x)-1)],[h(1) zeros(1,length(x)-1])*x.'

Method 3: Using FFT:

Computation of convolution using FFT (Fast Fourier Transform) has the advantage of reduced computational complexity when the length of inputs are large. To compute convolution, take FFT of the two sequences \(x\) and \(h\) with FFT length set to convolution output length \(length (x)+length(h)-1\), multiply the results and convert back to time-domain using IFFT (Inverse Fast Fourier Transform). Note that FFT is a direct implementation of circular convolution in time domain. Here we are attempting to compute linear convolution using circular convolution (or FFT) with zero-padding either one of the input sequence. This causes inefficiency when compared to circular convolution. Nevertheless, this method still provides \(O\left(\frac{N}{log_2N}\right)\) savings over brute-force method.

\[y(n) = IFFT[FFT_L (X) \ast FFT_L (H) ], \quad \; L=2^{nextpower2(N+M-1)}\]

Usually, the following algorithm is suffice which ignores additional zeros in the output terms.

\[y(n) = IFFT [ FFT_L (X) \ast FFT_L (H)], \quad \; L=N+M-1\]

Python

from scipy.fftpack import fft,ifft
y=ifft(fft(x,L)*(fft(h,L))) #Convolution using FFT and IFFT

Matlab

y=ifft(fft(x,L).*(fft(h,L)))

Other Methods:

If the input sequence is of infinite length or very very large as in many real time applications, block processing methods like Overlap-Add and Overlap-Save methods can be used to compute convolution in a faster and efficient way.

Standard Algorithms for Fast Convolution:

Standard algorithms for computing convolution that greatly reduce the computational complexity are

1) Cook-Toom Algorithm
2) Modified Cook-Toom Algorithm
3) Winograd Algorithm
4) Modified Winograd Algorithm
5) Iterated Convolution

Refer [4] -Fast Algorithms for Signal Processing by Richard E. Blahut for more details on the above algorithms (see reference section below).

Matlab Code

Implementing method 2 (convolution using Toeplitz matrix transformation) and method 3 (convolution using FFT) and comparing against Matlab’s standard conv function:

%Create random vectors for test
x=rand(1,7)+1i*rand(1,7);
h=rand(1,3)+1i*rand(1,3);
L=length(x)+length(h)-1;

%Convolution Using Toeplitz matrix
y1=toeplitz([h zeros(1,length(x)-1)],[h(1) zeros(1,length(x)-1)])*x.'
%Convolution FFT
y2=ifft(fft(x,L).*(fft(h,L))).'
%Matlab's standard function
y3=conv(h,x).'

Simulation output:

Comparing method 2 and method 3 against Matlab’s standard convolution function returns identical results

\[y1 =\begin{bmatrix} 0.2428 + 0.4536i\\ 0.1512 + 0.6668i\\ 0.8663 + 1.1188i\\ 0.5332 + 1.0162i\\ 0.8589 + 0.9822i\\ 0.4633 + 1.1006i\\ 0.4024 + 1.4706i\\ 0.3225 + 0.9790i\\ 0.2324 + 0.8227i\end{bmatrix}; y2 = \begin{bmatrix}0.2428 + 0.4536i\\ 0.1512 + 0.6668i\\ 0.8663 + 1.1188i\\ 0.5332 + 1.0162i\\ 0.8589 + 0.9822i\\ 0.4633 + 1.1006i\\ 0.4024 + 1.4706i\\ 0.3225 + 0.9790i\\ 0.2324 + 0.8227i\\ \end{bmatrix};y3 = \begin{bmatrix}0.2428 + 0.4536i\\ 0.1512 + 0.6668i\\ 0.8663 + 1.1188i\\ 0.5332 + 1.0162i\\ 0.8589 + 0.9822i\\ 0.4633 + 1.1006i\\ 0.4024 + 1.4706i\\ 0.3225 + 0.9790i\\ 0.2324 + 0.8227i\end{bmatrix}\]

References:

[1] Reddi.S.S,”Eigen Vector properties of Toeplitz matrices and their application to spectral analysis of time series, Signal Processing, Vol 7, North-Holland, 1984, pp 46-56.↗
[2] Robert M. Gray,”Toeplitz and circulant matrices – an overview”,Deptartment of Electrical Engineering,Stanford University,Stanford 94305,USA.↗
[3] Matlab documentation help on Toeplitz command.↗
[4] Richard E. Blahut,”Fast Algorithms for Signal Processing”,ISBN-13: 978-0521190497,Cambridge University Press,August 16, 2010.↗

Topics in this chapter

Essentials of Signal Processing
● Generating standard test signals
 □ Sinusoidal signals
 □ Square wave
 □ Rectangular pulse
 □ Gaussian pulse
 □ Chirp signal
Interpreting FFT results - complex DFT, frequency bins and FFTShift
 □ Real and complex DFT
 □ Fast Fourier Transform (FFT)
 □ Interpreting the FFT results
 □ FFTShift
 □ IFFTShift
Obtaining magnitude and phase information from FFT
 □ Discrete-time domain representation
 □ Representing the signal in frequency domain using FFT
 □ Reconstructing the time domain signal from the frequency domain samples
● Power spectral density
Power and energy of a signal
 □ Energy of a signal
 □ Power of a signal
 □ Classification of signals
 □ Computation of power of a signal - simulation and verification
Polynomials, convolution and Toeplitz matrices
 □ Polynomial functions
 □ Representing single variable polynomial functions
 □ Multiplication of polynomials and linear convolution
 □ Toeplitz matrix and convolution
Methods to compute convolution
 □ Method 1: Brute-force method
 □ Method 2: Using Toeplitz matrix
 □ Method 3: Using FFT to compute convolution
 □ Miscellaneous methods
Analytic signal and its applications
 □ Analytic signal and Fourier transform
 □ Extracting instantaneous amplitude, phase, frequency
 □ Phase demodulation using Hilbert transform
Choosing a filter : FIR or IIR : understanding the design perspective
 □ Design specification
 □ General considerations in design

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